Personally, I think the GTR is a great car but at the same time I'm not going to ignore some of the competition and the advances that competiton is making.
For example, we compare the GTR (in general without any indication of the level of GTR such as the "evo") to cars like the Z06, Gallardo, and Viper. However, those cars are compared using specific levels, the "Z06" and not what is basically the same car only improved- the ZR1, we use the "Gallardo" but we don't really use the Gallardo's new form of SuperLeggera... When we begin to compare the GTR as specifically as we compare those cars I believe the place of the GTR will become more apparent.
Further, with Best Motoring taking the initiative to do something along those lines and compare the R35 to the SuperLeggera, I'm tempted to ask if the GTR deserves comparison to the F430, in which case I say the limitations of the GTR become more obvious due to the incredible F430 Scuderia (which is basically the newest form of F430).
All in all, I think the GTR is a great car at a good price but I don't think it is the be-all and end-all of supercar competition. Even though it runs well with some, I don't think it is the best of them all and I certainly don't think most comparisons made are fair due to the non-specific nature of hypothetical comparisons.